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<h1 class="toc">Everything</h1>
<hr />
  <h2 class="toc">All Classes</h2>
    <a target="mainFrame" href="PySide.QtCore.QCoreApplication.Encoding-class.html"
     >PySide.QtCore.QCoreApplication.Encoding</a><br />    <a target="mainFrame" href="PySide.QtGui.QApplication.ColorSpec-class.html"
     >PySide.QtGui.QApplication.ColorSpec</a><br />    <a target="mainFrame" href="PySide.QtGui.QApplication.Type-class.html"
     >PySide.QtGui.QApplication.Type</a><br />    <a target="mainFrame" href="PySide.QtGui.QMainWindow.DockOption-class.html"
     >PySide.QtGui.QMainWindow.DockOption</a><br />    <a target="mainFrame" href="PySide.QtGui.QMainWindow.DockOptions-class.html"
     >PySide.QtGui.QMainWindow.DockOptions</a><br />    <a target="mainFrame" href="PySide.QtGui.QPaintDevice.PaintDeviceMetric-class.html"
     >PySide.QtGui.QPaintDevice.PaintDeviceMetric</a><br />    <a target="mainFrame" href="PySide.QtGui.QWidget.RenderFlag-class.html"
     >PySide.QtGui.QWidget.RenderFlag</a><br />    <a target="mainFrame" href="PySide.QtGui.QWidget.RenderFlags-class.html"
     >PySide.QtGui.QWidget.RenderFlags</a><br />    <a target="mainFrame" href="moltk.Aligner-class.html"
     >moltk.Aligner</a><br />    <a target="mainFrame" href="moltk.Aligner.Cell-class.html"
     >moltk.Aligner.Cell</a><br />    <a target="mainFrame" href="moltk.Aligner.QueryPosition-class.html"
     >moltk.Aligner.QueryPosition</a><br />    <a target="mainFrame" href="moltk.Aligner.Scorer-class.html"
     >moltk.Aligner.Scorer</a><br />    <a target="mainFrame" href="moltk.Aligner.Stage-class.html"
     >moltk.Aligner.Stage</a><br />    <a target="mainFrame" href="moltk.Aligner.TargetPosition-class.html"
     >moltk.Aligner.TargetPosition</a><br />    <a target="mainFrame" href="moltk.Aligner.TracebackPointer-class.html"
     >moltk.Aligner.TracebackPointer</a><br />    <a target="mainFrame" href="moltk.Alignment-class.html"
     >moltk.Alignment</a><br />    <a target="mainFrame" href="moltk.Alignment.List-class.html"
     >moltk.Alignment.List</a><br />    <a target="mainFrame" href="moltk.Alignment.Row-class.html"
     >moltk.Alignment.Row</a><br />    <a target="mainFrame" href="moltk.Angle-class.html"
     >moltk.Angle</a><br />    <a target="mainFrame" href="moltk.AngleDimension-class.html"
     >moltk.AngleDimension</a><br />    <a target="mainFrame" href="moltk.BaseBiosequence-class.html"
     >moltk.BaseBiosequence</a><br />    <a target="mainFrame" href="moltk.BaseBiosequence.BaseResidue-class.html"
     >moltk.BaseBiosequence.BaseResidue</a><br />    <a target="mainFrame" href="moltk.Biosequence-class.html"
     >moltk.Biosequence</a><br />    <a target="mainFrame" href="moltk.BiosequenceResidue-class.html"
     >moltk.BiosequenceResidue</a><br />    <a target="mainFrame" href="moltk.BitUnit-class.html"
     >moltk.BitUnit</a><br />    <a target="mainFrame" href="moltk.DimensionIndex-class.html"
     >moltk.DimensionIndex</a><br />    <a target="mainFrame" href="moltk.Displacement-class.html"
     >moltk.Displacement</a><br />    <a target="mainFrame" href="moltk.EString-class.html"
     >moltk.EString</a><br />    <a target="mainFrame" href="moltk.EString.const_iterator-class.html"
     >moltk.EString.const_iterator</a><br />    <a target="mainFrame" href="moltk.Information-class.html"
     >moltk.Information</a><br />    <a target="mainFrame" href="moltk.InformationDimension-class.html"
     >moltk.InformationDimension</a><br />    <a target="mainFrame" href="moltk.Length-class.html"
     >moltk.Length</a><br />    <a target="mainFrame" href="moltk.LengthDimension-class.html"
     >moltk.LengthDimension</a><br />    <a target="mainFrame" href="moltk.NanometerUnit-class.html"
     >moltk.NanometerUnit</a><br />    <a target="mainFrame" href="moltk.PDBStructure-class.html"
     >moltk.PDBStructure</a><br />    <a target="mainFrame" href="moltk.PDBStructure.Atom-class.html"
     >moltk.PDBStructure.Atom</a><br />    <a target="mainFrame" href="moltk.PDBStructure.Atom.RecordType-class.html"
     >moltk.PDBStructure.Atom.RecordType</a><br />    <a target="mainFrame" href="moltk.PDBStructure.Chain-class.html"
     >moltk.PDBStructure.Chain</a><br />    <a target="mainFrame" href="moltk.PDBStructure.Residue-class.html"
     >moltk.PDBStructure.Residue</a><br />    <a target="mainFrame" href="moltk.Printable-class.html"
     >moltk.Printable</a><br />    <a target="mainFrame" href="moltk.Quaternion-class.html"
     >moltk.Quaternion</a><br />    <a target="mainFrame" href="moltk.QueryPositionList-class.html"
     >moltk.QueryPositionList</a><br />    <a target="mainFrame" href="moltk.RadianUnit-class.html"
     >moltk.RadianUnit</a><br />    <a target="mainFrame" href="moltk.RigidTransform-class.html"
     >moltk.RigidTransform</a><br />    <a target="mainFrame" href="moltk.Rotation3D-class.html"
     >moltk.Rotation3D</a><br />    <a target="mainFrame" href="moltk.Rotation3D.Row-class.html"
     >moltk.Rotation3D.Row</a><br />    <a target="mainFrame" href="moltk.TargetPositionList-class.html"
     >moltk.TargetPositionList</a><br />    <a target="mainFrame" href="moltk.UnitVector3D-class.html"
     >moltk.UnitVector3D</a><br />    <a target="mainFrame" href="moltk.Vector3D-class.html"
     >moltk.Vector3D</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app.MoltkApp-class.html"
     >moltk.gui.moltk_app.MoltkApp</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app.MoltkMainWindow-class.html"
     >moltk.gui.moltk_app.MoltkMainWindow</a><br />    <a target="mainFrame" href="moltk.gui.moltk_ui.Ui_MoltkMainWindow-class.html"
     >moltk.gui.moltk_ui.Ui_MoltkMainWindow</a><br />    <a target="mainFrame" href="moltk.gui.structure_canvas.StructureCanvas-class.html"
     >moltk.gui.structure_canvas.StructureCanvas</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer.StructureRenderer-class.html"
     >moltk.gui.structure_renderer.StructureRenderer</a><br />    <a target="mainFrame" href="moltk.std_vector_int-class.html"
     >moltk.std_vector_int</a><br />  <h2 class="toc">All Functions</h2>
    <a target="mainFrame" href="moltk-module.html#align"
     >moltk.align</a><br />    <a target="mainFrame" href="moltk-module.html#cos"
     >moltk.cos</a><br />    <a target="mainFrame" href="moltk-module.html#get_unit_name"
     >moltk.get_unit_name</a><br />    <a target="mainFrame" href="moltk-module.html#get_unit_symbol"
     >moltk.get_unit_symbol</a><br />    <a target="mainFrame" href="moltk-module.html#load_fasta"
     >moltk.load_fasta</a><br />    <a target="mainFrame" href="moltk-module.html#sin"
     >moltk.sin</a><br />  <h2 class="toc">All Variables</h2>
    <a target="mainFrame" href="moltk-module.html#DIMENSION_AMOUNT"
     >moltk.DIMENSION_AMOUNT</a><br />    <a target="mainFrame" href="moltk-module.html#DIMENSION_ANGLE"
     >moltk.DIMENSION_ANGLE</a><br />    <a target="mainFrame" href="moltk-module.html#DIMENSION_CHARGE"
     >moltk.DIMENSION_CHARGE</a><br />    <a target="mainFrame" href="moltk-module.html#DIMENSION_INFORMATION"
     >moltk.DIMENSION_INFORMATION</a><br />    <a target="mainFrame" href="moltk-module.html#DIMENSION_LENGTH"
     >moltk.DIMENSION_LENGTH</a><br />    <a target="mainFrame" href="moltk-module.html#DIMENSION_MASS"
     >moltk.DIMENSION_MASS</a><br />    <a target="mainFrame" href="moltk-module.html#DIMENSION_TIME"
     >moltk.DIMENSION_TIME</a><br />  <div class="private">
    <a target="mainFrame" href="moltk-module.html#__package__"
     >moltk.__package__</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk-module.html#_moltk"
     >moltk._moltk</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#DIMENSION_AMOUNT"
     >moltk._moltk'.DIMENSION_AMOUNT</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#DIMENSION_ANGLE"
     >moltk._moltk'.DIMENSION_ANGLE</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#DIMENSION_CHARGE"
     >moltk._moltk'.DIMENSION_CHARGE</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#DIMENSION_INFORMATION"
     >moltk._moltk'.DIMENSION_INFORMATION</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#DIMENSION_LENGTH"
     >moltk._moltk'.DIMENSION_LENGTH</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#DIMENSION_MASS"
     >moltk._moltk'.DIMENSION_MASS</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#DIMENSION_TIME"
     >moltk._moltk'.DIMENSION_TIME</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#__package__"
     >moltk._moltk'.__package__</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#bit"
     >moltk._moltk'.bit</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#nanometer"
     >moltk._moltk'.nanometer</a><br />  </div>
  <div class="private">
    <a target="mainFrame" href="moltk._moltk%27-module.html#radian"
     >moltk._moltk'.radian</a><br />  </div>
    <a target="mainFrame" href="moltk-module.html#bit"
     >moltk.bit</a><br />    <a target="mainFrame" href="moltk.gui-module.html#__package__"
     >moltk.gui.__package__</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app-module.html#LicensedDeclarative"
     >moltk.gui.moltk_app.LicensedDeclarative</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app-module.html#LicensedMultimedia"
     >moltk.gui.moltk_app.LicensedMultimedia</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app-module.html#LicensedOpenVG"
     >moltk.gui.moltk_app.LicensedOpenVG</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app-module.html#QtCriticalMsg"
     >moltk.gui.moltk_app.QtCriticalMsg</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app-module.html#QtDebugMsg"
     >moltk.gui.moltk_app.QtDebugMsg</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app-module.html#QtFatalMsg"
     >moltk.gui.moltk_app.QtFatalMsg</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app-module.html#QtSystemMsg"
     >moltk.gui.moltk_app.QtSystemMsg</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app-module.html#QtWarningMsg"
     >moltk.gui.moltk_app.QtWarningMsg</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app-module.html#__package__"
     >moltk.gui.moltk_app.__package__</a><br />    <a target="mainFrame" href="moltk.gui.moltk_app-module.html#qApp"
     >moltk.gui.moltk_app.qApp</a><br />    <a target="mainFrame" href="moltk.gui.moltk_ui-module.html#__package__"
     >moltk.gui.moltk_ui.__package__</a><br />    <a target="mainFrame" href="moltk.gui.structure_canvas-module.html#__package__"
     >moltk.gui.structure_canvas.__package__</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#__package__"
     >moltk.gui.structure_renderer.__package__</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glColorPointerb"
     >moltk.gui.structure_renderer.glColorPointerb</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glColorPointerd"
     >moltk.gui.structure_renderer.glColorPointerd</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glColorPointerf"
     >moltk.gui.structure_renderer.glColorPointerf</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glColorPointeri"
     >moltk.gui.structure_renderer.glColorPointeri</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glColorPointers"
     >moltk.gui.structure_renderer.glColorPointers</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glColorPointerub"
     >moltk.gui.structure_renderer.glColorPointerub</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glColorPointerui"
     >moltk.gui.structure_renderer.glColorPointerui</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glColorPointerus"
     >moltk.gui.structure_renderer.glColorPointerus</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glDrawElementsub"
     >moltk.gui.structure_renderer.glDrawElementsub</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glDrawElementsui"
     >moltk.gui.structure_renderer.glDrawElementsui</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glDrawElementsus"
     >moltk.gui.structure_renderer.glDrawElementsus</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glDrawPixelsb"
     >moltk.gui.structure_renderer.glDrawPixelsb</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glDrawPixelsf"
     >moltk.gui.structure_renderer.glDrawPixelsf</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glDrawPixelsi"
     >moltk.gui.structure_renderer.glDrawPixelsi</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glDrawPixelss"
     >moltk.gui.structure_renderer.glDrawPixelss</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glDrawPixelsub"
     >moltk.gui.structure_renderer.glDrawPixelsub</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glDrawPixelsui"
     >moltk.gui.structure_renderer.glDrawPixelsui</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glDrawPixelsus"
     >moltk.gui.structure_renderer.glDrawPixelsus</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glEdgeFlagPointerb"
     >moltk.gui.structure_renderer.glEdgeFlagPointerb</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glIndexPointerb"
     >moltk.gui.structure_renderer.glIndexPointerb</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glIndexPointerd"
     >moltk.gui.structure_renderer.glIndexPointerd</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glIndexPointerf"
     >moltk.gui.structure_renderer.glIndexPointerf</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glIndexPointeri"
     >moltk.gui.structure_renderer.glIndexPointeri</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glIndexPointers"
     >moltk.gui.structure_renderer.glIndexPointers</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glIndexPointerub"
     >moltk.gui.structure_renderer.glIndexPointerub</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glNormalPointerb"
     >moltk.gui.structure_renderer.glNormalPointerb</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glNormalPointerd"
     >moltk.gui.structure_renderer.glNormalPointerd</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glNormalPointerf"
     >moltk.gui.structure_renderer.glNormalPointerf</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glNormalPointeri"
     >moltk.gui.structure_renderer.glNormalPointeri</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glNormalPointers"
     >moltk.gui.structure_renderer.glNormalPointers</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexCoordPointerb"
     >moltk.gui.structure_renderer.glTexCoordPointerb</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexCoordPointerd"
     >moltk.gui.structure_renderer.glTexCoordPointerd</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexCoordPointerf"
     >moltk.gui.structure_renderer.glTexCoordPointerf</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexCoordPointeri"
     >moltk.gui.structure_renderer.glTexCoordPointeri</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexCoordPointers"
     >moltk.gui.structure_renderer.glTexCoordPointers</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage1Db"
     >moltk.gui.structure_renderer.glTexImage1Db</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage1Df"
     >moltk.gui.structure_renderer.glTexImage1Df</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage1Di"
     >moltk.gui.structure_renderer.glTexImage1Di</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage1Ds"
     >moltk.gui.structure_renderer.glTexImage1Ds</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage1Dub"
     >moltk.gui.structure_renderer.glTexImage1Dub</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage1Dui"
     >moltk.gui.structure_renderer.glTexImage1Dui</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage1Dus"
     >moltk.gui.structure_renderer.glTexImage1Dus</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage2Db"
     >moltk.gui.structure_renderer.glTexImage2Db</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage2Df"
     >moltk.gui.structure_renderer.glTexImage2Df</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage2Di"
     >moltk.gui.structure_renderer.glTexImage2Di</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage2Ds"
     >moltk.gui.structure_renderer.glTexImage2Ds</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage2Dub"
     >moltk.gui.structure_renderer.glTexImage2Dub</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage2Dui"
     >moltk.gui.structure_renderer.glTexImage2Dui</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage2Dus"
     >moltk.gui.structure_renderer.glTexImage2Dus</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage3Db"
     >moltk.gui.structure_renderer.glTexImage3Db</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage3Df"
     >moltk.gui.structure_renderer.glTexImage3Df</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage3Di"
     >moltk.gui.structure_renderer.glTexImage3Di</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage3Ds"
     >moltk.gui.structure_renderer.glTexImage3Ds</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage3Dub"
     >moltk.gui.structure_renderer.glTexImage3Dub</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage3Dui"
     >moltk.gui.structure_renderer.glTexImage3Dui</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexImage3Dus"
     >moltk.gui.structure_renderer.glTexImage3Dus</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexSubImage1Db"
     >moltk.gui.structure_renderer.glTexSubImage1Db</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexSubImage1Df"
     >moltk.gui.structure_renderer.glTexSubImage1Df</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexSubImage1Di"
     >moltk.gui.structure_renderer.glTexSubImage1Di</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexSubImage1Ds"
     >moltk.gui.structure_renderer.glTexSubImage1Ds</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexSubImage1Dub"
     >moltk.gui.structure_renderer.glTexSubImage1Dub</a><br />    <a target="mainFrame" href="moltk.gui.structure_renderer-module.html#glTexSubImage1Dui"
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